augur package
=============

.. automodule:: augur
   :members:
   :show-inheritance:
   :undoc-members:

Subpackages
-----------

.. toctree::
   :maxdepth: 4

   augur.curate
   augur.data
   augur.dates
   augur.filter
   augur.import_
   augur.io
   augur.measurements
   augur.util_support

Submodules
----------

.. toctree::
   :maxdepth: 4

   augur.align
   augur.ancestral
   augur.argparse_
   augur.clades
   augur.debug
   augur.distance
   augur.errors
   augur.export
   augur.export_v1
   augur.export_v2
   augur.frequencies
   augur.frequency_estimators
   augur.index
   augur.lbi
   augur.mask
   augur.merge
   augur.parse
   augur.read_file
   augur.reconstruct_sequences
   augur.refine
   augur.sequence_traits
   augur.subsample
   augur.titer_model
   augur.titers
   augur.traits
   augur.translate
   augur.tree
   augur.types
   augur.utils
   augur.validate
   augur.validate_export
   augur.version
   augur.write_file